Protocol Resource

Counting cells and percent viability

Count fresh products immediately on receipt, and cryopreserved products immediately after thawing, before any other manipulation. Discovery is not liable for cell loss during later processing.

A gloved hand pipettes
Materials

What you need

Recommended: automated counter

  • Dual nucleation dye such as acridine orange / propidium iodide
  • Cell counting chamber
  • Automated cell counter

Alternative: trypan blue

  • 0.4% trypan blue
  • Neubauer hemacytometer and coverslip
  • DPBS (optional, for dilution)
Automated

Recommended method

Mix thoroughly

Mix the suspension so cells are evenly distributed.

Fresh product in a bag

Hold the bag by its top and bottom edges and invert side to side, about 1 second per rotation, 5 rotations.

  • Wipe the transfer line with an alcohol swab, clamp it, cut with sterile scissors
  • Unclamp and dispense a 2–3 mL aliquot into a sterile tube
  • Pipette up and down at least 5 times with a P1000
  • Dilute for your counter, e.g. 100 µL sample + 900 µL DPBS (1:10) for Cellometers

Fresh product in other containers

Gently pipette 25–50% of the suspension up and down at least 5 times, then dilute as above.

Cryopreserved product

Thaw first using the cryo leukopak or vial procedure.

Stain

Mix the cell suspension with an equal volume of counting dye.

Load and count

Load the chamber for your counter and count per the manufacturer's instructions, accounting for the initial dilution.

Trypan blue

Alternative method with calculator

Aliquot

Mix and immediately take a 10 µL aliquot.

Stain

Combine 10 µL sample with 10 µL 0.4% trypan blue. Count within 5 minutes.

Load

Load about 10 µL into the hemacytometer, filling the chamber.

Read

Under bright field, dead cells stain light to dark blue; viable cells are clear.

Count

Count viable cells in one quadrant; aim for ≥100 viable cells, using more quadrants if needed. Count dead cells in the same quadrants.

Hemacytometer calculator
Concentration—
Viability—
Total viable—

Concentration = (viable ÷ quadrants) × dilution × 10⁴. Viability = viable ÷ (viable + dead) × 100. Dilution 20 = 1:10 pre-dilution × 1:1 trypan blue.